Hermes Directory Structure Template

Hermes Directory Structure Template

Jun 06, 2026

# Hermes Directory Structure Template

This repository provides a standardized filesystem layout template for the ~/.hermes folder, organized systematically by purpose. It serves as a boilerplate for configuring, extending, and managing Hermes AI agents.

## Filesystem Layout

```text

~/.hermes/

├── config.yaml # Main configuration

├── .env # API keys and secrets

├── auth.json # OAuth provider credentials

├── SOUL.md # Agent identity (slot #1 in system prompt)

├── memories/

│ ├── MEMORY.md # Persistent agent facts

│ └── USER.md # User model

├── skills/ # All skills (bundled, hub, agent-created)

│ ├── mlops/

│ │ ├── axolotl/

│ │ │ ├── SKILL.md # The system prompt for the skill

│ │ │ ├── references/ # Docs the agent reads

│ │ │ └── scripts/ # Executable helpers

│ │ └── vllm/

│ ├── devops/

│ └── .hub/ # Skills Hub state

├── sessions/ # Per-platform session metadata

├── state.db # SQLite session store with FTS5

├── cron/

│ ├── jobs.json # Scheduled jobs

│ └── output/ # Cron run outputs

├── plugins/ # Custom plugins

├── hooks/ # Lifecycle hooks

├── skins/ # CLI themes

└── logs/

├── agent.log # Core agent diagnostics

├── gateway.log # Gateway traffic logs

└── errors.log # Error tracking

```

## Component Breakdown

### 1. Configuration

Core files that the agent boots from on every single run.

* *config.yaml**: Handles global settings, model endpoints, and operational parameters.

* *.env**: Local environment variables dedicated to sensitive API keys and tokens.

* *auth.json**: Manages active OAuth tokens and multi-provider credentials.

* *SOUL.md**: Defines the core identity, behavioral constraints, and personality baseline of the agent.

### 2. Knowledge

Persistent memory layers that span across all active communication channels and sessions.

* *MEMORY.md**: Fact base and long-term world knowledge collected by the agent.

* *USER.md**: Profile, preferences, and behavioral insights compiled about the user.

### 3. Capabilities (Skills)

Modular skill packs that grant specific executable abilities to the agent. Skills can be built-in, downloaded via the Hub, or dynamically generated by the agent itself.

Each individual skill follows a strict internal structure:

* *SKILL.md**: The technical system prompt instructing the agent how and when to invoke the skill.

* *references/**: Contextual documentation, API specs, or reference guides required by the skill.

* *scripts/**: Executable automation code, binaries, or helper tools that the skill triggers.

### 4. Runtime State

Tracks ephemeral execution data and platform alignment.

* *sessions/**: Stores metadata partitioned by specific platforms (e.g., Slack, Discord, Terminal).

* *state.db**: Embedded SQLite database utilizing FTS5 extension for ultra-fast, full-text historical search.

### 5. Automation

Allows the agent to execute periodic, autonomous operations without explicit user invocation.

* *cron/jobs.json**: Defines schedules, intervals, and target functions for background tasks.

* *cron/output/**: Captures execution logs and standard output so the agent can audit its own background tasks.

### 6. Extension

The dedicated customization surface area for advanced customization.

* *plugins/**: Standalone logic blocks that extend core architectural capabilities.

* *hooks/**: Interceptors for system lifecycle events (e.g., pre-boot, post-response).

* *skins/**: Custom visual definitions and styling sheets for the command-line interface.

### 7. Observability

Dedicated diagnostics system for error isolation, routine auditing, and debugging.

Logs are separated by subsystem agent.log, gateway.log, errors.log) to streamline stack trace analysis.

## Getting Started

To initialize this structure locally inside your environment, clone this template directly into your home directory or target path:

```bash

git clone https://github.com/KhaiTrang1995/hermes-structure.git ~/.hermes

```

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